发布时间 : 星期四 文章3.3蛋白质分析更新完毕开始阅读
第三章 第三节 蛋白质分析
从GenBank 数据库中下载一条植物钙调序列，用ANTHEPROT软件预测其特征序列，然后查阅相关资料，说明其特征序列的特性与功能。
LOCUS AC_000175 66004023 BP DNA LINEAR CON 06-AUG-2013
DEFINITION BOS TAURUS BREED HEREFORD CHROMOSOME 18, BOS_TAURUS_UMD_3.1, WHOLE
GENOME SHOTGUN SEQUENCE. ACCESSION AC_000175 GPC_000000187 VERSION AC_000175.1 GI:258513349 DBLINK BIOPROJECT: PRJNA33843 ASSEMBLY: GCF_000003055.4 KEYWORDS WGS; REFSEQ.
SOURCE BOS TAURUS (CATTLE) ORGANISM BOS TAURUS
EUKARYOTA; METAZOA; CHORDATA; CRANIATA; VERTEBRATA; EUTELEOSTOMI;
MAMMALIA; EUTHERIA; LAURASIATHERIA; CETARTIODACTYLA; RUMINANTIA;
PECORA; BOVIDAE; BOVINAE; BOS. REFERENCE 1 (BASES 1 TO 66004023)
AUTHORS ZIMIN,A.V., DELCHER,A.L., FLOREA,L., KELLEY,D.R., SCHATZ,M.C.,
PUIU,D., HANRAHAN,F., PERTEA,G., VAN TASSELL,C.P., SONSTEGARD,T.S.,
MARCAIS,G., ROBERTS,M., SUBRAMANIAN,P., YORKE,J.A. AND SALZBERG,S.L.
TITLE A WHOLE-GENOME ASSEMBLY OF THE DOMESTIC COW, BOS TAURUS JOURNAL GENOME BIOL. 10 (4), R42 (2009) PUBMED 19393038
COMMENT REFSEQ INFORMATION: THE REFERENCE SEQUENCE IS IDENTICAL TO GK000018.2.
ASSEMBLY NAME: BOS_TAURUS_UMD_3.1 (UMD3.1)
THE GENOMIC SEQUENCE FOR THIS REFSEQ RECORD IS FROM THE WHOLE GENOME REASSEMBLY RELEASED BY THE CENTER FOR BIOINFORMATICS AND
COMPUTATIONAL BIOLOGY, UNIVERSITY OF MARYLAND IN DECEMBER 2009. THE
ORIGINAL WHOLE GENOME SHOTGUN PROJECT HAS THE PROJECT ACCESSION
DAAA00000000.2. THE UMD3.1 ASSEMBLY WAS GENERATED USING GENOMIC
TRACES SUBMITTED BY THE BOVINE GENOME SEQUENCING PROJECT (PROJECT
ID 12555). IN THIS ASSEMBLY SYNTENY BETWEEN THE COW AND HUMAN GENOMES AND INDEPENDENT MAPPING DATA WERE USED TO ASSEMBLE ROUGHLY
99% OF THE GENOME ONTO THE 30 BOS TAURUS CHROMOSOMES.
##GENOME-ANNOTATION-DATA-START## ANNOTATION PROVIDER :: NCBI
ANNOTATION STATUS :: FULL ANNOTATION ANNOTATION VERSION :: BOS TAURUS ANNOTATION RELEASE 103
ANNOTATION PIPELINE :: NCBI EUKARYOTIC GENOME ANNOTATION
PIPELINE ANNOTATION SOFTWARE VERSION :: 5.1
ANNOTATION METHOD :: BEST-PLACED REFSEQ; GNOMON FEATURES ANNOTATED :: GENE; MRNA; CDS; NCRNA ##GENOME-ANNOTATION-DATA-END## FEATURES LOCATION/QUALIFIERS SOURCE 1..66004023
/ORGANISM=\ /MOL_TYPE=\ /DB_XREF=\ /CHROMOSOME=\ /BREED=\CONTIG
JOIN(NW_003104462.1:1..3210545,GAP(UNK100),NW_003080576.1:1..16487, GAP(UNK100),NW_003104463.1:1..8212699,GAP(UNK100),
NW_003080672.1:1..1678,GAP(UNK100),NW_003080673.1:1..2521, GAP(UNK100),NW_003080674.1:1..4816,GAP(UNK100),
NW_003104464.1:1..31414493,GAP(UNK100),NW_003081036.1:1..1922, GAP(UNK100),NW_003081037.1:1..4751,GAP(UNK100),
NW_003081038.1:1..3920,GAP(UNK100),NW_003104465.1:1..8147483, GAP(UNK100),NW_003081267.1:1..5300,GAP(UNK100),
NW_003104466.1:1..6608038,GAP(UNK100),NW_003081470.1:1..15428, GAP(UNK100),NW_003104467.1:1..74485,GAP(UNK100),
NW_003081475.1:1..2457,GAP(UNK100),NW_003081476.1:1..3502, GAP(UNK100),NW_003104468.1:1..252438,GAP(UNK100),
NW_003081480.1:1..6336,GAP(UNK100),NW_003081481.1:1..11985,
GAP(UNK100),NW_003104469.1:1..1844788,GAP(UNK100),
NW_003081527.1:1..6010,GAP(UNK100),NW_003081528.1:1..5016, GAP(UNK100),NW_003104470.1:1..226317,GAP(UNK100),
NW_003081538.1:1..13289,GAP(UNK100),NW_003104471.1:1..145192, GAP(UNK100),NW_003081543.1:1..1155,GAP(UNK100),
NW_003104472.1:1..278225,GAP(UNK100),NW_003081551.1:1..4023, GAP(UNK100),NW_003104473.1:1..215174,GAP(UNK100),
NW_003081556.1:1..62196,GAP(UNK100),NW_003104474.1:1..415273, GAP(UNK100),NW_003081568.1:1..12595,GAP(UNK100),
NW_003104475.1:1..79519,GAP(UNK100),NW_003081574.1:1..13966, GAP(UNK100),NW_003104476.1:1..243366,GAP(UNK100),
NW_003081585.1:1..4515,GAP(UNK100),NW_003081586.1:1..2600, GAP(UNK100),NW_003081587.1:1..49630,GAP(UNK100),
NW_003104477.1:1..17373,GAP(UNK100),NW_003081591.1:1..1060, GAP(UNK100),NW_003104478.1:1..17361,GAP(UNK100),
NW_003081596.1:1..4364,GAP(UNK100),NW_003081597.1:1..7719, GAP(UNK100),NW_003081598.1:1..6781,GAP(UNK100),
NW_003081599.1:1..5320,GAP(UNK100),NW_003081600.1:1..9869, GAP(UNK100),NW_003104479.1:1..59392,GAP(UNK100),
NW_003081603.1:1..1697,GAP(UNK100),NW_003081604.1:1..4544, GAP(UNK100),NW_003081605.1:1..6054,GAP(UNK100),
NW_003081606.1:1..43259,GAP(UNK100),NW_003081607.1:1..5067, GAP(UNK100),NW_003104480.1:1..1433083,GAP(UNK100),
NW_003081652.1:1..947,GAP(UNK100),NW_003104481.1:1..218641, GAP(UNK100),NW_003081674.1:1..990,GAP(UNK100), NW_003104482.1:1..2530669) //
自定义序列：
>PDB1QU3A LIGASE/RNA 06-JUL-99 (LENGTH= 880 RESIDUES)
DYEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYK
TMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEA
AQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNV
AITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGT
GCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTK
KPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVN
HVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRG
WFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQT
SDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYL
DYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEVDQALLDKWRTF
MNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIVIEHA